Publications

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Graze R. M. , Tzeng, R. Y., Howard, T. S.,  Arbeitman, M. N. (2018) Perturbation of IIS/TOR signaling alters the landscape of sex-differential gene expression in Drosophila. BMC genomics 19 (1), 893.

Leon-Novelo, L., Gerken, A. R., Graze, R. M., McIntyre, L. M., & Marroni, F. (2017). Direct Testing for Allele-Specific Expression Differences Between Conditions. G3: Genes| Genomes| Genetics.

Stevison, L. S., Sefick, S., Rushton, C., & Graze, R. M. (2017). Recombination rate plasticity: revealing mechanisms by design. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, 372(1736).

Arbeitman, M. N., New, F., Fear, J. M., Howard, T. S., Dalton, J. E., & Graze, R. M. (2016). Sex Differences in Drosophila Somatic Gene Expression: Variation and Regulation by Doublesex. G3: Genes| Genomes| Genetics, 8 (2), 447-460.

León-Novelo, L. G., McIntyre, L. M., Fear, J. M., & Graze, R.M. (2014). A flexible Bayesian method for detecting allelic imbalance in RNA-seq data. BMC genomics, 15(1), 920.

Graze, R. M., McIntyre, L. M., Morse, A. M., Boydu, B. M., Nuzhdin, S. V., & Wayne, M. L. (2014). What the X Has to Do with It: Differences in Regulatory Variability between the Sexes in Drosophila simulans. Genome biology and evolution, 6(4), 818-829.

Jensen, K., Sanchez-Garcia, J., Williams, C., Khare, S., Mathur, K., Graze, R.M., et al. (2013) Purification Of Transcripts And Metabolites From Drosophila Heads. J. Vis. Exp., 15;(73):e50245. doi: 10.3791/50245.

Graze, R.M., Novelo, L.L., Amin, V., Fear, J. M., Casella, G., Nuzhdin, S.V., and McIntyre, L.M. (2012) Allelic imbalance in Drosophila hybrid heads: exons, isoforms and evolution. Mol Biol Evol. First published online January 7 2012 doi: 10.1093/molbev/msr318.

Yang, Y., Graze, R.M., Walts, B.M., Lopez, C.M., Baker, H.V., Wayne, M.L., Nuzhdin, S.V., and McIntyre, L.M. (2011) Partitioning Transcript Variation in Drosophila: Abundance, Isoforms and Alleles. G3 1:427-436.

Graze, R.M., McIntyre, L.M., Main, B.J., Wayne, M.L., and Nuzhdin, S.V. (2009) Regulatory divergence in Drosophila melanogaster and D. simulans, a genome-wide analysis of allele specific expression. Genetics 183:547-561.

Main, B.J., Bickel, R.D., McIntyre, L.M., Graze, R.M., Calabrase, P.P., and Nuzhdin, S.V. (2009) Allele-specific expression assays using Solexa. BMC Genomics 10:422.

Graze, R.M., Barmina, O., Tufts, D., Naderi, E., Harmon, K. L., Persianinova, M., & Nuzhdin, S. V. (2007). New candidate genes for sex-comb divergence between Drosophila mauritiana and Drosophila simulans. Genetics, 176(4), 2561-2576.

Kopp, A., Graze, R.M., Xu, S., Carroll, S.B. and Nuzhdin, S.V. (2003) Quantitative Trait Loci Responsible for Variation in Sexually Dimorphic Traits in Drosophila melanogaster. Genetics, 163: 771-787.